The big renaming passed.
Scripts were renamed:
tb2j_plotter.py to rad-plot-tb2j.py
tb2j_refractor.py to tb2j-refractor.py
phonopy-plotter.py (Removed in 0.5.12)
Modules were renamed:
file_logic to model
template_logic to template
map_logic to map
tb2j_tools was renamed to exchange
Module map was moved out of exchange.
Fix bugs in tb2j-refractor.py.